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cerebis / sim3C

Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)
GNU General Public License v3.0
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Assess alternatives to BioPython as file IO is a bottle-neck #9

Closed cerebis closed 8 months ago

cerebis commented 5 years ago

BioPython is now one of the major time consumers in simulating reads. Scikit-bio is another package which might prove faster. Otherwise, we could simply implement our own.

cerebis commented 8 months ago

Recently moved to dnaio for output.