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cerr / CERR

Matlab/Octave based platform for Radiological Research.
https://cerr.github.io/CERR/
GNU Lesser General Public License v2.1
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ROE NTCP vs. TCP and NTCP vs. BED Models #992

Closed Johnthought closed 7 months ago

Johnthought commented 7 months ago

Hi,

I want to set up a NTCP vs. BED as demonstrated in the "ROE (Radiotherapy Outcomes Estimator): An open-source tool for optimizing radiotherapy prescriptions" paper by Aditi et al. 2023.

Is there any guide as to how to do this?

The instructions on https://github.com/cerr/CERR/wiki/Using-ROE Say "only if configured to specify BED model"

I don't know how to do this. Any help is appreciated.

Best wishes, John Ryan

Lecturer Monash University Australia

aditiiyer commented 7 months ago

Hi John,

Thanks for your interest in ROE.

The instructions have been updated to clarify that the user simply needs to ensure that a JSON configuration file for the desired BED model is available. This and other model configuration files should be located in the user-specified “ROEModels” directory.

Please let me know if you have any further questions.

Best, Aditi

From: Johnthought @.> Sent: Sunday, April 7, 2024 11:59 PM To: cerr/CERR @.> Cc: Subscribed @.***> Subject: [EXTERNAL] [cerr/CERR] ROE NTCP vs. TCP and NTCP vs. BED Models (Issue #992)

Hi, I want to set up a NTCP vs. BED as demonstrated in the "ROE (Radiotherapy Outcomes Estimator): An open-source tool for optimizing radiotherapy prescriptions" paper by Aditi et al. 2023. Is there any guide as to how to do this? The instructions

Hi,

I want to set up a NTCP vs. BED as demonstrated in the "ROE (Radiotherapy Outcomes Estimator): An open-source tool for optimizing radiotherapy prescriptions" paper by Aditi et al. 2023.

Is there any guide as to how to do this?

The instructions on https://github.com/cerr/CERR/wiki/Using-ROEhttps://urldefense.com/v3/__https:/github.com/cerr/CERR/wiki/Using-ROE__;!!KVWo1iE!WndqQGlF67KebFxRdU2Zo4akDK1k6pqPelkQzKIh_Zit29U4GRGQzhxYGUBVPOZvAaRdd6mpvP19jBzo85MPUw$ Say "only if configured to specify BED model"

I don't know how to do this. Any help is appreciated.

Best wishes, John Ryan

Lecturer Monash University Australia

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Johnthought commented 7 months ago

Thank you Aditi

I have added all the models from the \ModelImplementationLibrary\DosimetricModels\Models into the PlanAnalysis\sampleFilesForROE\Models

I keep getting the same error in MatLab:

"Unrecognized function or variable 'nfrxScaleVnumFrxProtocol'. Error in ROE (line 478) xScaleV = nfrxScaleV(nfrxScaleVnumFrxProtocol>=1); Error while evaluating UIControl Callback."

Best wishes, John

aditiiyer commented 7 months ago

Hi John,

Can you please test with the latest updates (commit: b7597d2)? These include a fix for the issue you encountered.

Best, Aditi From: Johnthought @.> Sent: Monday, April 8, 2024 7:27 PM To: cerr/CERR @.> Cc: Iyer, Aditi @.>; Comment @.> Subject: [EXTERNAL] Re: [cerr/CERR] ROE NTCP vs. TCP and NTCP vs. BED Models (Issue #992)

Thank you Aditi I have added all the models from the \ModelImplementationLibrary\DosimetricModels\Models into the PlanAnalysis\sampleFilesForROE\Models I keep getting the same error in MatLab: "Unrecognized function or variable 'nfrxScaleVnumFrxProtocol'. 

Thank you Aditi

I have added all the models from the \ModelImplementationLibrary\DosimetricModels\Models into the PlanAnalysis\sampleFilesForROE\Models

I keep getting the same error in MatLab:

"Unrecognized function or variable 'nfrxScaleVnumFrxProtocol'. Error in ROE (line 478) xScaleV = nfrxScaleV(nfrxScaleVnumFrxProtocol>=1); Error while evaluating UIControl Callback."

Best wishes, John

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Johnthought commented 7 months ago

Hi Aditi,

That has worked. Thank you so much.

This is fantastic.

Best wishes, John

Johnthought commented 7 months ago

The new update fixed the issue.