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cfce / chilin

ChIP-seq DC and QC Pipeline
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Cannot Find Command chilin #3

Closed christacaggiano closed 7 years ago

christacaggiano commented 7 years ago

Hi everyone,

I followed all of the steps to install chilin. However, after I source the virtual environment, when I try to run chilin -h, it says (chilin_env)[ccag@ares bin]$ chilin -bash: chilin: command not found

What might have happened here?

qinqian commented 7 years ago

The issue is caused by the virtualenv and setuptools on older system, which lead to sys_platform or src_root problem. We have tried to fix this, pull the latest version of chilin. Then, rerun the installation with following,

sudo pip2.7 uninstall distribute 
sudo pip2.7 install -U pip
sudo pip2.7 install setuptools -U
sudo pip2.7 install -U virtualenv
cd chilin
rm -rf chilin_env
python2.7 setup.py install -f
source chilin_env/bin/activate
#for centos
sudo yum install lzo-devel
#for ubuntu
sudo apt-get install liblzo2-dev
pip2.7 install python-lzo
python2.7 setup.py install