cfe-lab / MiCall

Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
https://cfe-lab.github.io/MiCall
GNU Affero General Public License v3.0
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Bump coverage from 7.4.3 to 7.4.4 #1065

Closed dependabot[bot] closed 8 months ago

dependabot[bot] commented 8 months ago

Bumps coverage from 7.4.3 to 7.4.4.

Changelog

Sourced from coverage's changelog.

Version 7.4.4 — 2024-03-14

  • Fix: in some cases, even with [run] relative_files=True, a data file could be created with absolute path names. When combined with other relative data files, it was random whether the absolute file names would be made relative or not. If they weren't, then a file would be listed twice in reports, as detailed in issue 1752_. This is now fixed: absolute file names are always made relative when combining. Thanks to Bruno Rodrigues dos Santos for support.

  • Fix: the last case of a match/case statement had an incorrect message if the branch was missed. It said the pattern never matched, when actually the branch is missed if the last case always matched.

  • Fix: clicking a line number in the HTML report now positions more accurately.

  • Fix: the report:format setting was defined as a boolean, but should be a string. Thanks, Tanaydin Sirin <pull 1754_>_. It is also now documented on the :ref:configuration page <config_report_format>.

.. _issue 1752: nedbat/coveragepy#1752 .. _pull 1754: nedbat/coveragepy#1754

.. _changes_7-4-3:

Commits
  • bc5e2d7 docs: sample HTML for 7.4.4
  • 9b0008b docs: prep for 7.4.4
  • a536161 docs: thanks, Bruno Rodrigues dos Santos
  • e06e4f9 chore: make doc_upgrade
  • f30818e chore: make upgrade
  • 1b19799 fix: ensure absolute paths are relative when combined #1752
  • 1ef020d build: more cheats for convenient URLs
  • 3d57a07 docs: document the report:format setting
  • 8e30221 fix: correct the type of report:format in config.py (#1754)
  • 6289be8 refactor: use dataclasses, no namedtuple
  • Additional commits viewable in compare view


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codecov[bot] commented 8 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 88.07%. Comparing base (2782d18) to head (6e4f54d).

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #1065 +/- ## ======================================= Coverage 88.07% 88.07% ======================================= Files 29 29 Lines 7156 7156 ======================================= Hits 6303 6303 Misses 853 853 ```

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