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cfe-lab / MiCall

Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
https://cfe-lab.github.io/MiCall
GNU Affero General Public License v3.0
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Bump matplotlib from 3.7.3 to 3.9.1.post1 #1143

Closed dependabot[bot] closed 3 months ago

dependabot[bot] commented 3 months ago

Bumps matplotlib from 3.7.3 to 3.9.1.post1.

Release notes

Sourced from matplotlib's releases.

REL: 3.9.1

This is the first bugfix release of the 3.9.x series.

This release contains several bug-fixes and adjustments:

  • Add GitHub artifact attestations for sdist and wheels
  • Re-add matplotlib.cm.get_cmap; note this function will still be removed at a later date
  • Allow duplicate backend entry points
  • Fix Axes autoscaling of thin bars at large locations
  • Fix Axes autoscaling with axhspan / axvspan
  • Fix Axes3D autoscaling of Line3DCollection / Poly3DCollection
  • Fix Axes3D mouse interactivity with non-default roll angle
  • Fix box aspect ratios in Axes3D with alternate vertical axis
  • Fix case handling of backends specified as module://...
  • Fix crash with TkAgg on Windows with tk.window_focus: True
  • Fix interactive update of SubFigures
  • Fix interactivity when using the IPython console
  • Fix pickling of AxesWidgets and SubFigures
  • Fix scaling on GTK3Cairo / GTK4Cairo backends
  • Fix text wrapping within SubFigures
  • Promote mpltype Sphinx role to a public extension; note this is only intended for development reasons

REL: 3.9.0

Highlights of this release include:

  • Plotting and Annotation improvements
    • Axes.inset_axes is no longer experimental
    • Legend support for Boxplot
    • Percent sign in pie labels auto-escaped with usetex=True
    • hatch parameter for stackplot
    • Add option to plot only one half of violin plot
    • axhline and axhspan on polar axes
    • Subplot titles can now be automatically aligned
    • axisartist can now be used together with standard Formatters
    • Toggle minorticks on Axis
    • StrMethodFormatter now respects axes.unicode_minus
  • Figure, Axes, and Legend Layout
    • Subfigures now have controllable zorders
    • Getters for xmargin, ymargin and zmargin
  • Mathtext improvements
    • mathtext documentation improvements
    • mathtext spacing corrections
  • Widget Improvements
    • Check and Radio Button widgets support clearing
  • 3D plotting improvements
    • Setting 3D axis limits now set the limits exactly
  • Other improvements
    • New BackendRegistry for plotting backends
    • Add widths, heights and angles setter to EllipseCollection
    • image.interpolation_stage rcParam

... (truncated)

Commits
  • 9c9792a DOC: Add Zenodo DOI for 3.9.1
  • 60bfa22 BLD: bump branch away from tag
  • 44be14c REL: 3.9.1
  • 5325425 DOC: Create release notes for 3.9.1
  • 568a039 Merge pull request #28507 from meeseeksmachine/auto-backport-of-pr-28430-on-v...
  • 7fa9f24 Merge pull request #28506 from meeseeksmachine/auto-backport-of-pr-28451-on-v...
  • 06189c2 Backport PR #28430: Fix pickling of AxesWidgets.
  • c43313a Backport PR #28451: Fix GTK cairo backends
  • 560fdc4 Merge pull request #28499 from meeseeksmachine/auto-backport-of-pr-28498-on-v...
  • 5552302 Backport PR #28498: Don't fail if we can't query system fonts on macOS
  • Additional commits viewable in compare view


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dependabot[bot] commented 3 months ago

Superseded by #1145.