cfe-lab / MiCall

Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
https://cfe-lab.github.io/MiCall
GNU Affero General Public License v3.0
14 stars 9 forks source link

Bump scipy from 1.10.1 to 1.14.1 #1147

Closed dependabot[bot] closed 1 month ago

dependabot[bot] commented 3 months ago

Bumps scipy from 1.10.1 to 1.14.1.

Release notes

Sourced from scipy's releases.

SciPy 1.14.1 Release Notes

SciPy 1.14.1 adds support for Python 3.13, including binary wheels on PyPI. Apart from that, it is a bug-fix release with no new features compared to 1.14.0.

Authors

  • Name (commits)
  • h-vetinari (1)
  • Evgeni Burovski (1)
  • CJ Carey (2)
  • Lucas Colley (3)
  • Ralf Gommers (3)
  • Melissa Weber Mendonça (1)
  • Andrew Nelson (3)
  • Nick ODell (1)
  • Tyler Reddy (36)
  • Daniel Schmitz (1)
  • Dan Schult (4)
  • Albert Steppi (2)
  • Ewout ter Hoeven (1)
  • Tibor Völcker (2) +
  • Adam Turner (1) +
  • Warren Weckesser (2)
  • ਗਗਨਦੀਪ ਸਿੰਘ (Gagandeep Singh) (1)

A total of 17 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete.

SciPy 1.14.0 Release Notes

SciPy 1.14.0 is the culmination of 3 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with python -Wd and check for DeprecationWarning s). Our development attention will now shift to bug-fix releases on the 1.14.x branch, and on adding new features on the main branch.

This release requires Python 3.10+ and NumPy 1.23.5 or greater.

... (truncated)

Commits
  • 92d2a85 REL: 1.14.1 rel commit [wheel build]
  • 85623a1 Merge pull request #21362 from tylerjereddy/treddy_1.14.1_backports
  • d924005 MAINT: PR 21362 revisions [wheel build]
  • b901a4e MAINT, CI: PR 21362 revisions [wheel build]
  • 2a7ec60 MAINT, BLD: PR 21362 revisions [wheel build]
  • f4f084d MAINT, CI: PR 21362 revisions [wheel build]
  • b712fc6 DOC: update 1.14.1 relnotes [wheel build]
  • cdd5aca MAINT: special: Accommodate changed integer handling in NumPy 2.0. (#21401)
  • 0f91838 BLD: cp313 wheels on manylinux_aarch64 (#21409)
  • 6dd0b00 MAINT, CI: wheel build changes [wheel build]
  • Additional commits viewable in compare view


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Donaim commented 1 month ago

@dependabot recreate

dependabot[bot] commented 1 month ago

Looks like scipy is up-to-date now, so this is no longer needed.