Closed ArtPoon closed 10 years ago
Because we have no HLA-A, -B, or -C references in csf2counts This is tricky because there is no meaningful reading frame - the region being sequenced comprises two exons separated by an intron.
Created new driver STEP_5_CSF2NUC.py that takes nucleotide reference sequences and trims CSF reads, outputs alignment (Amplicon mode only!)
Because we have no HLA-A, -B, or -C references in csf2counts This is tricky because there is no meaningful reading frame - the region being sequenced comprises two exons separated by an intron.