Closed sebastian-luna-valero closed 4 years ago
From the solution provided on stack overflow for generators:
try:
yield next(seq)
except StopIteration:
return
should work and I can apply these changes. However, I think there are further issues with the conda package for cgat-apps 0.5.4. It seems like we are unable to run any code that requires cython code.(please see comments in https://github.com/cgat-developers/cgat-flow/pull/96).
In the meantime can we not just rebuild cgat-apps for python 3.6 only.
Hi Sebastian,
Im not having any luck debugging this. I fixed bed2bed but the FastaIterator is still failing. I just cant work it out as far as I can see I have modified the data to reflect the change in generators as above without any luck (See AC-itererror branch)
Any suggestions would be greatly appreciated
Managed to find the issue, fixed with #49
Hi,
After releasing version
0.5.4
, it looks like Jenkins tests are failing for:Both throwing:
RuntimeError: generator raised StopIteration
The major change with this release is that we are using Python 3.7 instead of Python 3.6.
I think we are hitting this: https://stackoverflow.com/questions/51700960/runtimeerror-generator-raised-stopiteration-every-time-i-try-to-run-app
Any suggestions?
Best regards, Sebastian