Argparser compatibility code error

cgat-developers / cgat-apps

cgat-apps repository

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Argparser compatibility code error #52

Closed jscaber closed 4 years ago

jscaber commented 4 years ago

File "***/cgat-developers-v2/cgat-apps/cgat/tools/bam2geneprofile.py", line 599, in main infile, gtf = args TypeError: 'Namespace' object is not iterable

Acribbs commented 4 years ago

Sorry thats my fault, I made changes to use argparse and I relied largely on our testing to spot mistakes, unfortunately we have gaps in our testing it seems. I suspect there will be more of these issues