Closed sebastian-luna-valero closed 4 years ago
Thanks @sebastian-luna-valero .
I have updated deprecated code to pandas1.0 and failing tests pass but other errors are now created: https://github.com/cgat-developers/cgat-apps/pull/61
Unfortunately I am in San Diego at the moment and the cgat code its compelling on my new Mac so I won't be able to debug this until I return next week.
I would prefer to use the latest code rather than pin, there are some really nice features in pandas 1.0.
Fixed and merged https://github.com/cgat-developers/cgat-apps/pull/61
Many thanks, Adam!
I would like to release a new version of cgat-apps
to reflect this update. Currently we are on 0.5.6
, should we jump to 0.6.0
this time?
Best regards, Sebastian
Hi Sebastian,
Yeh I agree that this would make sense, do you want me to make a pypi release or do you want to do this?
BW, Adam
Hi Adam,
I have done it already, thanks.
I will keep an eye on bioconda trigger to package it as well there.
Best regards, Sebastian
Hi,
After upgrading pandas from
0.25
to1.0
tests are failing forcgat-apps
.Please check both Jenkins and Travis outputs to see the error messages.
Is there an easy fix or do we prefer to pin pandas to
<1.0
in conda environments?Best regards, Sebastian