cgat-developers / cgat-apps

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gtf2gtf to filter duplicate CDS and exon #73

Closed Just08 closed 3 years ago

Just08 commented 4 years ago

Hi,

I have some difficulties to understand what option I have to use with gtf2gtf tools to get no isoform duplicates for exon and CDS.

Thanks in advance

Acribbs commented 3 years ago

Sorry for the late reply.

I don't think this is currently possible with gtf2gtf. Only gene and transcript and coordinates are currently supported.