Closed Acribbs closed 3 years ago
looks like the input bam files for the bam2geneprofile and bam2peakshape are malformed and when you run samtools view you get the following error: '[E::sam_hrecs_error] Malformed key:value pair at line 1: "@SQ\tSN:chr1\tLN:249250621
'[E::sam_hrecs_error] Malformed key:value pair at line 1: "@SQ\tSN:chr1\tLN:249250621
looks like the input bam files for the bam2geneprofile and bam2peakshape are malformed and when you run samtools view you get the following error:
'[E::sam_hrecs_error] Malformed key:value pair at line 1: "@SQ\tSN:chr1\tLN:249250621