Closed IanSudbery closed 2 years ago
I've installed several versions of the environments over the last few weeks.
Sometimes it installs cutadapt v3 or v2, which does not have the --format=fastq setting and so the pipeline breaks.
--format=fastq
But sometimes it install cutadapt v1 that does have it.
I guess given that this is now 2 major version increments out of date, we should remove the --format swtich and pin the cutadapt version >=2 ?
--format
I've installed several versions of the environments over the last few weeks.
Sometimes it installs cutadapt v3 or v2, which does not have the
--format=fastqsetting and so the pipeline breaks.But sometimes it install cutadapt v1 that does have it.
I guess given that this is now 2 major version increments out of date, we should remove the
--formatswtich and pin the cutadapt version >=2 ?