Closed IanSudbery closed 3 years ago
Currently the yml for pipeline_mapping has separate configuration values for bowtie_threads and bowtie2_threads, but the pipeline uses bowtie_threads even if bowtie2 is being run. This commit fixes that so that bowtie2 uses bowtie2_threads.
Currently the yml for pipeline_mapping has separate configuration values for bowtie_threads and bowtie2_threads, but the pipeline uses bowtie_threads even if bowtie2 is being run. This commit fixes that so that bowtie2 uses bowtie2_threads.