pipeline_genesets assumes that a genome has a miRBase entry

cgat-developers / cgat-flow

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pipeline_genesets assumes that a genome has a miRBase entry #136

Open IanSudbery opened 3 years ago

IanSudbery commented 3 years ago

Which, obviously, not all genomes do. In particular I am working with the yeast genome, and there is no miRBase. I'm also about to start working on the CHO genome, which doesn't have a mirBase either. Both these have Ensembl and UCSC entries, so it seems sensible that the genesets pipeline should run on them.

jscaber commented 2 years ago

Did you start fixing this Ian? A simple conditional for the miRBase would be the best solution here?