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cgat-developers / cgat-flow

cgat-flow repository
MIT License
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Regex in buildExonTranscript (pipeline_genesets) #160

Open jaime11 opened 3 months ago

jaime11 commented 3 months ago

Hello:

The current regex in buildExonTranscript (pipeline_genesets) is not valid:

@transform(buildUCSCGeneSet,
           regex("*.gtf.gz"),
           PARAMS['interface_geneset_exons_gtf'])
def buildExonTranscript(infile, outfile):

It should be: regex(".*\.gtf.gz")