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cgat-developers / cgat-flow

cgat-flow repository
MIT License
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Wrong test for switch (?) #71

Closed kevinrue closed 5 years ago

kevinrue commented 5 years ago

Am I misunderstanding anything or is this line doing the exact opposite of the expected behaviour?

Acribbs commented 5 years ago

@Charlie-George is the best to answer this one.

Charlie-George commented 5 years ago

Hi - If keep intermediates is 1 (yes) in the yml file then all the strings deleting the intermediate temporary bam files will be removed from the statement string, hence you will get all the intermediates left in the workflow.

Is it not working, I'm running it with 0 and getting no intermediate files

kevinrue commented 5 years ago

Sorry ! I got mixed up between projects. I enabled keep in one, and didn't the files in the other 😖

Charlie-George commented 5 years ago

Phew :)

From: Kevin Rue-Albrecht notifications@github.com Sent: 10 October 2018 13:53:50 To: cgat-developers/cgat-flow Cc: Charlotte George; Mention Subject: Re: [cgat-developers/cgat-flow] Wrong test for switch (?) (#71)

Sorry ! I got mixed up between projects. I enabled keep in one, and didn't the files in the other 😖

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