cgat-developers / cgat-flow

cgat-flow repository
MIT License
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STAR read from named pipe #79

Closed IanSudbery closed 5 years ago

IanSudbery commented 5 years ago

Currently STAR reads from a named pipe when using single end data (with the <(zcat %(infiles)s) syntax).

This is no good if STAR is run in 2pass mode as it need to read the file twice.