Python library upgrades - Githubissues

cggh / biipy

Docker image for bioinformatics analysis.

MIT License

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Python library upgrades #24

Closed alimanfoo closed 8 years ago

alimanfoo commented 8 years ago

The following libraries can be upgraded:

cython (0.24)
numpy (1.11.0)
lxml (3.6.0)
scipy (0.17.0)
pandas (0.18.0)
numexpr (2.5.2)
llvmlite (0.10.0)
numba (0.25.0)
ipython[all] (4.2.0)
h5py (2.6.0)
bcolz (1.0.0)
rpy2 (2.7.8)
scikit-learn (0.17.1)
bokeh (0.11.1)
dask (0.8.2)
zarr (0.4.0)
msprime (0.1.10)
psutil (4.1.0)

Note that a newer version of pysam is also available however we shouldn't upgrade at this time because it would break compatibility with pysamstats.

hardingnj commented 8 years ago

Done in newest commit, with exception of numpy which stays at 1.10.0 as anaconda.