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cggh / biipy

Docker image for bioinformatics analysis.
MIT License
6 stars 2 forks source link

Upgrades 20170126 #41

Closed alimanfoo closed 7 years ago

alimanfoo commented 7 years ago

This PR has a collection of Python package upgrades. I've tested on a local conda environment and everything seems OK.

alimanfoo commented 7 years ago

@hardingnj don't merge this yet, there's a couple of compatibility problems I need to resolve.

alimanfoo commented 7 years ago

TODO: upgrade numexpr, scikit-allel, zarr.

alimanfoo commented 7 years ago

@hardingnj this is good to go. I've added integration with the travis CI service, see the .travis.yml file for configuration. Basically this will mean that for any pull request, travis will automatically run a job to try to install the conda and pypi package lists into a conda environment, and will also run the scikit-allel test suite, to verify that at least scikit-allel's dependencies are all OK.