15 October 2013 (FCID: C2F6MACXX & C2N14ACXX, 2x50)

[smondet]

• [x] subsheet to: Anne Plessis ap133@nyu.edu, Michael Purugganan mp132@nyu.edu
• [x] subsheet to: "Jaglin, Xavier" Xavier.Jaglin@nyumc.org, "Fishell, Gordon" gordon.fishell@med.nyu.edu, Claude Desplan cd38@nyu.edu
• [x] validate Submission Sheet(s)
• [x] if needed, remove previous run directories on rabbot:/hiseq to make space
• [x] if needed, remove previous run directories on bowery:/scratch to make space
• [x] remove previous runs on the hiseq machine

  131021_SN911_0188_AC2F6MACXX

• [x] do tar.gz on Pod
• [x] transfer targz
• [x] untar targx
• [x] mv tar to gencore-raw
• [ ] backup tarball to sftp.bio
• [x] compute md5 on Pod
• [x] compute md5 on bowery
• [x] validate Submission Sheet(s) again and remove edit permissions
• [x] import Submission Sheet(s) and register flowcell
• [x] demultiplex
• [x] fastx

  131021_SN911_0187_BC2N14ACXX

• [x] do tar.gz on Pod
• [x] transfer targz
• [x] untar targx
• [x] mv tar to gencore-raw
• [ ] backup tarball to sftp.bio
• [x] compute md5 on Pod
• [x] compute md5 on bowery
• [x] validate Submission Sheet(s) again and remove edit permissions
• [x] import Submission Sheet(s) and register flowcell
• [x] demultiplex
• [x] fastx

  Finalization

• [x] review statistics
• [x] deliver
• [x] send emails

[smondet]

$ qsub -v DIR=131021_SN911_0188_AC2F6MACXX rsync-tar.pbs 
2711939.crunch.local

PBS Job Id: 2711939.crunch.local
Job Name:   tar-hiseq-rsync
Exec host:  compute-13-21/8
Execution terminated
Exit_status=0
resources_used.cput=00:44:48
resources_used.mem=8700kb
resources_used.vmem=334788kb
resources_used.walltime=01:48:22

$ qsub -v DIR=131021_SN911_0187_BC2N14ACXX  rsync-tar.pbs 
2711945.crunch.local

PBS Job Id: 2711945.crunch.local
Job Name:   tar-hiseq-rsync
Exec host:  compute-12-13/6
Execution terminated
Exit_status=0
resources_used.cput=00:40:52
resources_used.mem=8592kb
resources_used.vmem=334692kb
resources_used.walltime=02:05:49

[smondet]

_build/efmpexp start untar 131021_SN911_0188_AC2F6MACXX

efmp_2013-10-28-21h54m22s405ms-UTC_089809344: Monitored-PBS "untar-131021_SN911_0188_AC2F6MACXX" on Gencore@Bowery: Running as 2712774.crunch.local in /scratch/gencore/playground/efmp_monitored_pbs/efmp_2013-10-28-21h54m49s616ms-UTC_089809344

 $ _build/efmpexp start untar 131021_SN911_0187_BC2N14ACXX

- `efmp_2013-10-28-22h22m21s841ms-UTC_089809344`: Monitored-PBS "untar-131021_SN911_0187_BC2N14ACXX" on Gencore@Bowery: Running as 2712999.crunch.local in /scratch/gencore/playground/efmp_monitored_pbs/efmp_2013-10-28-22h22m24s666ms-UTC_089809344

[smondet]

[gencore@Bowery|0 jobs|/data/cgsb/gencore-raw/hiseq-700911]
$ cat 2013-10-29.14:09:38.131021_SN911_0187_BC2N14ACXX.tar.gz.md5
bb5348096fef7f2a07038e89f6608c06  131021_SN911_0187_BC2N14ACXX.tar.gz
[gencore@Bowery|0 jobs|/data/cgsb/gencore-raw/hiseq-700911]
$ cat 2013-10-29.14:09:38.131021_SN911_0188_AC2F6MACXX.tar.gz.md5
a8d177771daf84672b19b2c3bd69aec7  131021_SN911_0188_AC2F6MACXX.tar.gz

 sm4431@pod:    0 jobs in ~
==  $ cat 2013-10-28.1*
bb5348096fef7f2a07038e89f6608c06  131021_SN911_0187_BC2N14ACXX.tar.gz
a8d177771daf84672b19b2c3bd69aec7  131021_SN911_0188_AC2F6MACXX.tar.gz