Halloween RAPID 2x150 Run Confirmation: 31 Oct 2013 (FCID: H7DW1ADXX & H7D22ADXX)

[smondet]

• [x] subsheet to:
  David Gresham dg107@nyu.edu, Rodoniki Athanasiadou r.athanasiadou@nyu.edu
• [x] subsheet to: Andreas Hochwagen ah128@nyu.edu, Neil Alexander Humphryes nah9@nyu.edu, Tovah Elise Markowitz tem298@nyu.edu
• [x] subsheet to Lionel Christiaen lc121@nyu.edu, Alberto Stolfi albertostolfi@gmail.com
• [ ] validate Submission Sheet(s)
• [x] if needed, remove previous run directories on rabbot:/hiseq to make space
• [ ] if needed, remove previous run directories on bowery:/scratch to make space
• [x] remove previous runs on the hiseq machine
• [x] do tar.gz on Pod
• [x] transfer targz
• [x] untar targx
• [x] mv tar to gencore-raw
• [ ] backup tarball to sftp.bio
• [x] compute md5 on Pod
• [x] compute md5 on bowery
• [x] validate Submission Sheet(s) again and remove edit permissions
• [x] import Submission Sheet(s) and register flowcell
• [x] demultiplex
• [x] fastx
• [x] review statistics
• [x] deliver
• [x] send emails

[smondet]

Hitscore Pipeline

$ hitscore production b2f start -user sm4431 /scratch/gencore/hiseq-700911/131102_SN911_0190_BH7D22ADXX
Evaluation 37539 started.

PBS Job Id: 2767906.crunch.local
Job Name:   HS-B2F-37539-H7D22ADXX_2013-11-04_14-44-32.893349
Exec host:  compute-13-2/9+compute-13-2/8+compute-13-2/7+compute-13-2/6+compute-13-2/5+compute-13-2/4+compute-13-2/3+compute-13-2/2
Execution terminated
Exit_status=0
resources_used.cput=01:08:56
resources_used.mem=140564kb
resources_used.vmem=2802832kb
resources_used.walltime=00:33:20

$ hitscore production fxqs start -user sm4331 -from-b2f 37539
Evaluation 37562 started!

[smondet]

MD5's

 sm4431@pod:    0 jobs in ~
==  $ cat 2013-11-04.14\:47\:*
106547909f9b3c9dda5479fbc2511480  131102_SN911_0190_BH7D22ADXX.tar.gz
40a3950ec956446257bbe9f574bfeaa0  131101_SN911_0189_AH7DW1ADXX.tar.gz

[gencore@Bowery|0 jobs|/data/cgsb/gencore-raw/hiseq-700911]
$ cat 2013-11-04.16\:42\:*
40a3950ec956446257bbe9f574bfeaa0  131101_SN911_0189_AH7DW1ADXX.tar.gz
106547909f9b3c9dda5479fbc2511480  131102_SN911_0190_BH7D22ADXX.tar.gz