2014-03-19 C3JLAACXX 1x50 Rushlow, Hochwagen, Ercan

[moonwatcher]

• [x] email submission sheet to Rushlow
• [x] email submission sheet to Hochwagen
• [x] email submission sheet to Ercan
• [x] validate submission sheet Rushlow
• [x] validate submission sheet Hochwagen
• [x] validate submission sheet Ercan
• [x] if needed, remove previous run directories on pod:/hiseq to make space
• [x] if needed, remove previous run directories on bowery:/scratch/gencore to make space
• [x] remove previous runs on the hiseq machine
• [x] tar the run on pod started
• [x] tar the run on pod finished
• [x] pull run tar file from pod to bowery
• [x] untar run on bowery
• [x] move tar file to /data/cgsb/gencore-raw/
• [x] Pod: backup_sav_data: Save runParameters.xml and InterOp in /hiseq/SAV_only/
• [x] validate submission sheet again and remove edit permissions
• [x] import submission sheet and register the flowcell on hitscore
• [x] START demultiplex with hitscore
• [x] FINISH demultiplex with hitscore
• [x] START calculate statistics with hitscore fastx
• [x] FINISH calculate statistics with hitscore fastx
• [x] review statistics and email them to Tara
• [x] deliver
• [x] send emails

[moonwatcher]

Potentially there will be a follow up about access to the data since both people listed as data owners have no bowery account...