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NYU CGSB Genomics Core Facility
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2014-04-01 HiSeq 2500 Rapid Run 1x50 Run FCID: H97GRADXX Hochwagen
#148
Closed
moonwatcher
closed
10 years ago
moonwatcher
commented
10 years ago
Before the run
[x] email submission sheet to Hochwagen
[x] validate submission sheet Hochwagen
[x] if needed, remove previous run directories on pod:/hiseq to make space
[x] if needed, remove previous run directories on bowery:/scratch/gencore to make space
[x] remove previous runs on the hiseq machine
After the run
[x]
Pod:
Save
runParameters.xml
and
InterOp
in
/hiseq/SAV_only/
[x] START tar the run on pod
[x] FINISH tar the run on pod
[x] START pull run tar file from pod to bowery
[x] FINISH pull run tar file from pod to bowery
[x] START untar run on bowery
[x] FINISH untar run on bowery
[x] move tar file to /data/cgsb/gencore-raw/
[x] validate submission sheet again and remove edit permissions
[x] import submission sheet and register the flowcell on hitscore
[x] START demultiplex with hitscore
[x] FINISH demultiplex with hitscore
[x] START calculate statistics with hitscore fastx
[x] FINISH calculate statistics with hitscore fastx
[x] review statistics
[x] deliver
[x] send emails
Before the run
After the run
runParameters.xml
andInterOp
in/hiseq/SAV_only/