2014-06-10 MiSeq A8VJ5 - Gresham

[swapyy]

Before the run

• [x] Send submission sheet
• [x] Make sure there is space on the MiSeq hard-drive

  After the run

• [x] Copy run directory to gencore-raw
• [x] START tar the run on pod
• [x] FINISH tar the run on pod
• [x] START pull run tar file from pod to bowery
• [x] FINISH pull run tar file from pod to bowery
• [x] START untar run on bowery
• [x] FINISH untar run on bowery
• [x] move tar.gz file to /data/cgsb/gencore-raw/miseq-M02455
• [x] Inspect FASTQ files in /scratch/gencore/miseq-M02455/RUN_DIR/Data/Intensities/BaseCalls/
• [x] Create run directory in /data/cgsb/gencore/out/PI_NAME/DATE_RUN_NAME/
• [x] Copy FASTQ files to run directory and set access rights as setfacl -m u::r,...
• [x] Email user the location of the run directory