Transfer Data

Commands below assume, this variable has been set: RUNID=130423_SN911_0133_BC21HJACXX

[x] TRANSFER DATA rabbot$ qsub -v DIR=$RUNID ~/bin/hiseq-rsync.pbs 4405.rabbotcluster.bio.nyu.edu -- FAILED 4473.rabbotcluster.bio.nyu.edu -- DONE
[x] BACKUP to sftp.bio rabbot:$ qsub -v DIR=$RUNID ~/bin/hiseq-backup.pbs 4506.rabbotcluster.bio.nyu.edu -- DONE
[x] COPY SAV FILES rabbot$ qsub -v DIR=$RUNID ~/bin/hiseq-rsync-SAV-files.pbs 4507.rabbotcluster.bio.nyu.edu -- FAILED 4873.rabbotcluster.bio.nyu.edu -- DONE
[x] Give Sebastien permissions: $ qsub -v DIR=$RUNID /data/cgsb/gencore-raw/bin/seb-perm.pbs 1661043.crunch.local -- DONE
[x] SECURE DATA bowery-0-1$ screen -S chattr-133 $ ~/bin/hiseq-chattr.sh $RUNID -- DONE
Demultiplex
[x] remove edit permissions on Submission Sheet
[x] import metadata
[x] demultiplex
[x] fastx
[x] review statistics
Deliver
[x] deliver
[x] send emails

cgsb / hitscore