5-Jun-2013 BD2AWDACXX 1x50

[smondet]

Info

4 Lanes for David Gresham dg107@nyu.edu, Naomi Ziv nz375@nyu.edu, Jungeui Hong jh2663@nyu.edu, Nathan Brandt nb75@nyu.edu

2 Lane for: Sevinc Ercan se71@nyu.edu, Maxwell Kramer maxjkramer@gmail.com, Sarah Albritton sea283@nyu.edu

1 Lane for: Andreas Hochwagen ah128@nyu.edu, Tovah Markowitz tem298@nyu.edu

Submission Sheets

• [x] create and email for Gresham
• [x] create and email for Ercan
• [x] create and email for Hochwagen

  Transfer Data

Commands below assume, this variable has been set: RUNID=130606_SN911_0139_BD2AWDACXX

• [x] TRANSFER DATA
  rabbot$ qsub -v DIR=$RUNID ~/bin/hiseq-rsync.pbs
  16416.rabbotcluster.bio.nyu.edu -- FAILED

Running job on Bowery now: bowery$ qsub -v DIR=$RUNID /data/cgsb/gencore-raw/bin/rsync.pbs 1975981.crunch.local -- SUCCESS

• [x] BACKUP to sftp.bio rabbot:$ qsub -v DIR=$RUNID ~/bin/hiseq-backup.pbs 17365.rabbotcluster.bio.nyu.edu -- SUCCESS
• [x] COPY SAV FILES rabbot$ qsub -v DIR=$RUNID ~/bin/hiseq-rsync-SAV-files.pbs Manually transferred all but Thumbnails.
• [x] Give Sebastien permissions: $ qsub -v DIR=$RUNID /data/cgsb/gencore-raw/bin/seb-perm.pbs 1978668.crunch.local -- SUCCESS
• [x] SECURE DATA bowery-0-3$ screen -S chattr-139 $ ~/bin/hiseq-chattr.sh $RUNID -- SUCCESS

  Demultiplex

• [x] remove edit permissions on Submission Sheet
• [x] import metadata
• [x] demultiplex
• [x] fastx
• [x] review statistics

  Deliver

• [x] deliver
• [x] send emails

[agarwal]

@smondet This flowcell is ready for demultiplexing.