Info

14 lanes for: Michael Purugganan mp132@nyu.edu, Richard A Bonneau rb133@nyu.edu, Olivia Wilkins ow9@nyu.edu, Gina Pham gina.pham@nyu.edu

Submission Sheet

Commands below assume, this variable has been set: RUNID=130613_SN911_0141_AD2AWEACXX

[x] TRANSFER DATA bowery$ qsub -v DIR=$RUNID /data/cgsb/gencore-raw/bin/rsync.pbs 1978681.crunch.local -- FAILED 1980233.crunch.local -- SUCCESS
[x] Give Sebastien permissions: $ qsub -v DIR=$RUNID /data/cgsb/gencore-raw/bin/seb-perm.pbs 1984662.crunch.local -- SUCCESS
[x] SECURE DATA bowery-0-3$ screen -S chattr-141 $ ~/bin/hiseq-chattr.sh $RUNID -- SUCCESS
[x] BACKUP to sftp.bio rabbot:$ qsub -v DIR=$RUNID ~/bin/hiseq-backup.pbs 17368.rabbotcluster.bio.nyu.edu -- SUCCESS
[x] COPY SAV FILES rabbot$ qsub -v DIR=$RUNID ~/bin/hiseq-rsync-SAV-files.pbs 17372.rabbotcluster.bio.nyu.edu -- FAILED 17374.rabbotcluster.bio.nyu.edu -- SUCCESS
Demultiplex
[x] remove edit permissions on Submission Sheet
[x] import metadata
[x] demultiplex
[x] fastx
[x] review statistics
D2AWBACXX

Transfer Data

Commands below assume, this variable has been set: RUNID=130615_SN911_0142_BD2AWBACXX

[x] TRANSFER DATA bowery$ qsub -v DIR=$RUNID /data/cgsb/gencore-raw/bin/rsync.pbs 1980234.crunch.local -- SUCCESS
[x] Give Sebastien permissions: $ qsub -v DIR=$RUNID /data/cgsb/gencore-raw/bin/seb-perm.pbs 1984663.crunch.local -- SUCCESS
[x] SECURE DATA bowery-0-3$ screen -S chattr-142 $ ~/bin/hiseq-chattr.sh $RUNID -- SUCCESS
[x] BACKUP to sftp.bio rabbot:$ qsub -v DIR=$RUNID ~/bin/hiseq-backup.pbs 17369.rabbotcluster.bio.nyu.edu -- SUCCESS
[x] COPY SAV FILES rabbot$ qsub -v DIR=$RUNID ~/bin/hiseq-rsync-SAV-files.pbs 17373.rabbotcluster.bio.nyu.edu -- FAILED 17375.rabbotcluster.bio.nyu.edu -- SUCCESS
Demultiplex
[x] remove edit permissions on Submission Sheet
[x] import metadata
[x] demultiplex
[x] fastx
[x] review statistics
Deliver
[x] deliver
[x] send emails