19-Jun 2x50 C27F4ACXX (Olivia)

[smondet]

Submission Sheet

• [x] create and email

  Transfer Data

Commands below assume, this variable has been set: RUNID=130625_SN911_0149_AC27F4ACXX

• [x] TRANSFER DATA bowery$ qsub -v DIR=$RUNID /data/cgsb/gencore-raw/bin/rsync.pbs 2060085.crunch.local -- SUCCESS
• [x] Give Sebastien permissions: $ qsub -v DIR=$RUNID /data/cgsb/gencore-raw/bin/seb-perm.pbs 2062126.crunch.local -- SUCCESS
• [x] SECURE DATA bowery-0-1$ screen -S chattr-149 $ ~/bin/hiseq-chattr.sh $RUNID -- SUCCESS
• [x] BACKUP to sftp.bio rabbot:$ qsub -v DIR=$RUNID ~/bin/hiseq-backup.pbs 18288.rabbotcluster.bio.nyu.edu -- SUCCESS
• [x] COPY SAV FILES rabbot$ ~/bin/hiseq-rsync-SAV-files.sh $RUNID -- SUCCESS

  Demultiplex

• [x] remove edit permissions on Submission Sheet
• [x] import metadata
• [x] demultiplex
• [x] fastx
• [x] review statistics

  Deliver

• [x] deliver
• [x] send emails

[agarwal]

@smondet This flowcell is ready for demultiplexing.