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cguccione / human_host_filtration

Pipeline which removes human DNA from microbial shotgun samples.
BSD 3-Clause "New" or "Revised" License
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Improve links to GRCh38 and CHM13 Download #8

Open cguccione opened 7 months ago

cguccione commented 7 months ago

In order to make results as clear/similar as possible, these links are the most accurate for download. We need to upload ReadMe accordingly

human-GRC-db.mmi description: host reference genome for human (outdated) reference: GCF_000001405.40 (GRCh38.p14) reference link: https://www.ncbi.nlm.nih.gov/data-hub/genome/GCF_000001405.40/

human-GCA-phix-db.mmi description: host reference genome for human (current) + PhiX reference (human): GCF_009914755.1 (T2T-CHM13v2.0) reference (PhiX): NC_001422.1 (Escherichia phage phiX174) reference link (human): https://www.ncbi.nlm.nih.gov/data-hub/genome/GCF_009914755.1/ reference link: (PhiX): https://www.ncbi.nlm.nih.gov/nuccore/9626372