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cguyomar / MinYS

MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.
GNU Affero General Public License v3.0
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No module named 'genome_graph' #3

Closed karinedurand closed 3 years ago

karinedurand commented 3 years ago

Hi, I try to use script gfa2fasta.py, but i can't find module genome_graph. How install it? I try pip install but can't find this module. Best Karine

cguyomar commented 3 years ago

Hi Karine,

This module is packaged with MinYS. The easiest way to use it may be to install MinYS with Conda, and then you'll be able to use that script.

Best, Cervin

clemaitre commented 3 years ago

Hi Karine,

it should also work if the genome_graph/ directory from this repository is located in the same directory as the gfa2fasta.py file (as it is organized in this repository, if you cloned it).

Best, Claire