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chadadavis / sbglib

Automatically exported from code.google.com/p/sbglib
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Domain detection and splitting #113

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Could be based on hits from trans_3_0 blast database, as these come from the 
entity table.

Matt has code to do this overlap decision making.

Original issue reported on code.google.com by chad.a.davis@gmail.com on 15 May 2010 at 1:39

GoogleCodeExporter commented 9 years ago 
See also: Automated Prediction of Domain Boundaries in CASP

Original comment by chad.a.davis@gmail.com on 15 May 2010 at 1:40

GoogleCodeExporter commented 9 years ago 
how often is there no hit overlap? Check the logs. Really worth it?

Original comment by chad.a.davis@gmail.com on 15 May 2010 at 1:40

GoogleCodeExporter commented 9 years ago 
[deleted comment]
GoogleCodeExporter commented 9 years ago 
Split::Pfam (using pfam2_scan.pl)

Original comment by chad.a.davis@gmail.com on 17 Jul 2010 at 11:17

GoogleCodeExporter commented 9 years ago 
Do this based on the location of the hits.

Only when a component then has no interaction templates that cover 50% of its 
sequence, then split into domains (based on location of partial hits), and redo 
looking for templates between each new domain and each of the other existing 
components.

Original comment by chad.a.davis@gmail.com on 17 Jul 2010 at 11:17

GoogleCodeExporter commented 9 years ago

Original comment by chad.a.davis@gmail.com on 19 Feb 2011 at 3:50