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chadadavis / sbglib

Automatically exported from code.google.com/p/sbglib
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Remove 'transform' from DomainIO::pdb #125

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
This is currently just making a copy of a PDB file, it's not necessary.

If STAMP requires STAMPDIR, we can parse that ourselves. Better: make it a 
config option.

Original issue reported on code.google.com by chad.a.davis@gmail.com on 18 May 2010 at 8:30

GoogleCodeExporter commented 9 years ago

Original comment by chad.a.davis@gmail.com on 19 May 2010 at 3:14

GoogleCodeExporter commented 9 years ago 
If the SBG::Domain object is shorter than the full chain, then, yes, we do need 
to truncate it.
In some cases, however, the copy may not be necessary. This could be optimized.

Original comment by chad.a.davis@gmail.com on 19 Jun 2010 at 4:49

GoogleCodeExporter commented 9 years ago 
Would also be possible to use PDL to read the ATOM records. Just have to parse 
the STAMP descriptors. Would still probably be faster than having an external 
call. But we can always 'use Benchmark'

Original comment by chad.a.davis@gmail.com on 23 Feb 2011 at 4:36