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chadadavis / sbglib

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Novel interactions #140

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Update Complex::check_clashes to return an ArrayRef. If the domain passes the 
test, it will be placed, Complex can maintain an interaction network of the 
contacts between domains. When this network has an edge not present in the 
template interaction network, then we have a potentially novel interaction.

Original issue reported on code.google.com by chad.a.davis@gmail.com on 20 Jun 2010 at 1:07

GoogleCodeExporter commented 9 years ago

Original comment by chad.a.davis@gmail.com on 21 Jun 2010 at 11:36

GoogleCodeExporter commented 9 years ago 
Use standard tools (Qcons and/or interprets) to identify interfaces in a give 
structure (after using ComplexIO::pdb)

Original comment by chad.a.davis@gmail.com on 21 Jun 2010 at 12:03

GoogleCodeExporter commented 9 years ago 
This will result in a distinct 'contact network' which is not the same as the 
interaction network, as the latter is based on known interface templates.

Original comment by chad.a.davis@gmail.com on 17 Jul 2010 at 11:16

GoogleCodeExporter commented 9 years ago 
The 'network difference' between the two networks: contact network minus 
interaction network, is the network of potentially novel contacts

Original comment by chad.a.davis@gmail.com on 23 Aug 2010 at 2:28

GoogleCodeExporter commented 9 years ago 
Also note when ring closure fails

Original comment by chad.a.davis@gmail.com on 21 Feb 2011 at 4:04