search

chadadavis / sbglib

Automatically exported from code.google.com/p/sbglib
0 stars 0 forks source link

structures from WWW::PDB #166

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
Get structures from WWW::PDB , cache them to $DS/pdb-flat, Don't use STAMP, 
update Bio::DomainI

Also Support Biounit

Original issue reported on code.google.com by chad.a.davis@gmail.com on 18 Feb 2011 at 4:37

GoogleCodeExporter commented 9 years ago

Original comment by chad.a.davis@gmail.com on 21 Feb 2011 at 4:10

GoogleCodeExporter commented 9 years ago 
Note that structures will be downloaded to a hierarchical directory structure 
with the path like:

$cachedir/pub/pdb/data/structures/divided/pdb/g3/pdb1g3n.ent.gz

where $cachdir is whatever you pass to:

WWW::PDB->cache($cachedir);

Original comment by chad.a.davis@gmail.com on 19 Oct 2011 at 10:56

GoogleCodeExporter commented 9 years ago 
Since we still need to be able to lookup the path to a file and not simply get 
a file handle, WWW::PDB will not be a drop in replacement.

Original comment by chad.a.davis@gmail.com on 19 Oct 2011 at 11:14