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chadlaing / Panseq

Pan-genomic sequence analysis
http://lfz.corefacility.ca/panseq
GNU General Public License v3.0
43 stars 14 forks source link

problem with installing Panseq #12

Closed camillaln closed 7 years ago

camillaln commented 7 years ago

Heia, I am trying to install Panseq on my mac.

When I run perl Build.pl I end up with this: Checking prerequisites... requires: ! Bio::DB::Fasta is not installed ! Bio::Seq is not installed ! Bio::SeqIO is not installed

ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions of the modules indicated above before proceeding with this installation

Run 'Build installdeps' to install missing prerequisites.

Could not get valid metadata. Error is: ERROR: Missing required field 'dist_version' for metafile

Could not create MYMETA files Creating new 'Build' script for 'Panseq' version ''

I then run ./Build installdeps

But it does install those missing ones. Could you tell me how I can get those modules?

Thanks for any help with this,

Camilla

chadlaing commented 7 years ago

Hi,

Those are all BioPerl dependencies. If the build script doesn't install them, you could try installing BioPerl separately, and then running the Panseq tests to ensure everything is working.

Chad

camillaln commented 7 years ago

Thanks! I will try that :)

Sendt fra min iPhone

Den 4. mar. 2017 kl. 07.07 skrev Chad Laing notifications@github.com:

Hi,

Those are all BioPerl dependencies. If the build script doesn't install them, you could try installing BioPerl separately, and then running the Panseq tests to ensure everything is working.

Chad

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