I've coded Panseq so to output locus name and snp position (per the reference) to the end of each row of the snp_table.txt output. With many genomes core_snps.txt can become massive whereas snp_table.txt remains a manageable size!
I don't code in perl so apologies for any untidiness in this solution!
Hi Chad,
I've coded Panseq so to output locus name and snp position (per the reference) to the end of each row of the snp_table.txt output. With many genomes core_snps.txt can become massive whereas snp_table.txt remains a manageable size!
I don't code in perl so apologies for any untidiness in this solution!
Best regards,
Matt