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chadlaing / Panseq

Pan-genomic sequence analysis
http://lfz.corefacility.ca/panseq
GNU General Public License v3.0
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Problems when installing Test::Pretty dependency #8

Closed jpflorido closed 8 years ago

jpflorido commented 8 years ago

Hi, I'm trying to install Panseq and all its dependencies. All of them went OK, but Test:Pretty dependency:

You have loaded versions of test modules known to have problems with Test2.

This could explain some test failures.

* Module 'Test::Pretty' is known to be broken in version 0.32 and below, newer versions have not been tested. You have: 0.32

... Files=20, Tests=55, 3 wallclock secs ( 0.14 usr 0.03 sys + 2.50 cusr 0.32 csys = 2.99 CPU) Result: FAIL Failed 11/20 test programs. 24/55 subtests failed. TOKUHIROM/Test-Pretty-0.32.tar.gz ./Build test -- NOT OK //hint// to see the cpan-testers results for installing this module, try: reports TOKUHIROM/Test-Pretty-0.32.tar.gz Running Build install make test had returned bad status, won't install without force

I know that the problem is not Panseq itself, but without this dependency, cannot go forward. Any suggestions? Thanks

chadlaing commented 8 years ago

What version of Perl?

jpflorido commented 8 years ago

5.18.2-2ubuntu1.1

gsong1205 commented 8 years ago

I have the same problem. Do you know how to solve it?

gsong1205 commented 8 years ago

When I am testing the panseq: perl t/output.t Error message is: You have loaded versions of test modules known to have problems with Test2. This could explain some test failures. * Module 'Test::Pretty' is known to be broken in version 0.32 and below, newer versions have not been tested. You have: 0.28

chadlaing commented 8 years ago

I am looking into this, it seems to be Test2 that is the issue.

chadlaing commented 8 years ago

I have updated the tests to use Test2::Bundle::Extended, instead of Test::Pretty. Additionally, this update resolves the failing test issues (Issue #9) when using BLAST v2.3.0 or v2.4.0.