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chaeyeunpark / UnionFind

C++ implementation of Union-Find decoder and its Python binding.
GNU Lesser General Public License v2.1
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Installation error on macOS (both with arm64 and x86_64 conda environments) #10

Open honamnguyen opened 2 years ago

honamnguyen commented 2 years ago

When following the installation instruction (with an additional step of conda install cmake), I ran into the following error. Any suggestion on what went wrong? Thanks!

Output (click to expand) ``` python3 setup.py install Requirement already satisfied: ninja in /Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages (from -r requirements.txt (line 1)) (1.10.2.3) Requirement already satisfied: numpy in /Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages (from -r requirements.txt (line 2)) (1.22.0) Requirement already satisfied: scipy in /Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages (from -r requirements.txt (line 3)) (1.7.3) running install running bdist_egg running egg_info writing UnionFindPy.egg-info/PKG-INFO writing dependency_links to UnionFindPy.egg-info/dependency_links.txt writing requirements to UnionFindPy.egg-info/requires.txt writing top-level names to UnionFindPy.egg-info/top_level.txt reading manifest file 'UnionFindPy.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'UnionFindPy.egg-info/SOURCES.txt' installing library code to build/bdist.macosx-10.9-x86_64/egg running install_lib running build_py running build_ext -- The C compiler identification is AppleClang 13.0.0.13000029 -- The CXX compiler identification is AppleClang 13.0.0.13000029 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- union_find version -- pybind11 v2.8.1 -- Found PythonInterp: /Users/honamnguyen/miniconda3/envs/qcircuit64/bin/python3 (found version "3.9.7") -- Found PythonLibs: /Users/honamnguyen/miniconda3/envs/qcircuit64/lib/libpython3.9.dylib -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Performing Test HAS_FLTO_THIN -- Performing Test HAS_FLTO_THIN - Success -- Configuring done -- Generating done -- Build files have been written to: /Users/honamnguyen/miniconda3/UnionFind/build/temp.macosx-10.9-x86_64-3.9 [2/3] Building CXX object UnionFindPy/cpp/CMa.../_union_find_py.dir/binding/UnionFindPy.cpp. FAILED: UnionFindPy/cpp/CMakeFiles/_union_find_py.dir/binding/UnionFindPy.cpp.o /Library/Developer/CommandLineTools/usr/bin/c++ -D_union_find_py_EXPORTS -I/Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/externals/robin-map/include -I/Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include -I/Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/externals -isystem /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/externals/pybind11/include -isystem /Users/honamnguyen/miniconda3/envs/qcircuit64/include/python3.9 -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.1.sdk -fPIC -fvisibility=hidden -flto -std=gnu++2a -MD -MT UnionFindPy/cpp/CMakeFiles/_union_find_py.dir/binding/UnionFindPy.cpp.o -MF UnionFindPy/cpp/CMakeFiles/_union_find_py.dir/binding/UnionFindPy.cpp.o.d -o UnionFindPy/cpp/CMakeFiles/_union_find_py.dir/binding/UnionFindPy.cpp.o -c /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp In file included from /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:18: In file included from /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include/Decoder.hpp:19: /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include/LatticeConcept.hpp:42:9: error: no member named 'convertible_to' in namespace 'std' = std::convertible_to> || detail::std_array; ~~~~~^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include/LatticeConcept.hpp:42:24: error: 'T' does not refer to a value = std::convertible_to> || detail::std_array; ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include/LatticeConcept.hpp:40:19: note: declared here template ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include/LatticeConcept.hpp:52:8: error: expected concept name with optional arguments } -> std::convertible_to; ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include/LatticeConcept.hpp:55:8: error: expected concept name with optional arguments } -> std::convertible_to; ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include/LatticeConcept.hpp:58:8: error: expected concept name with optional arguments } -> vertex_connections_result; ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include/LatticeConcept.hpp:61:8: error: expected concept name with optional arguments } -> std::convertible_to; ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include/LatticeConcept.hpp:64:8: error: expected concept name with optional arguments } -> std::convertible_to; ^ In file included from /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:18: /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include/Decoder.hpp:36:10: error: unknown type name 'LatticeConcept' template class Decoder ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include/Decoder.hpp:43:8: error: unknown type name 'Lattice' const Lattice lattice_; ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:40:52: error: template argument for non-type template parameter must be an expression using UnionFindFromParity = UnionFindCPP::Decoder; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/include/Decoder.hpp:36:25: note: template parameter is declared here template class Decoder ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:41:13: error: use of undeclared identifier 'UnionFindFromParity' py::class_(m, "DecoderFromParity") ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:57:12: error: use of undeclared identifier 'UnionFindFromParity' return UnionFindFromParity(static_cast(num_parities), ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:42:8: error: no matching function for call to 'init' .def(py::init( ^~~~~~~~ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/externals/pybind11/include/pybind11/pybind11.h:1657:5: note: candidate template ignored: substitution failure [with Func = (lambda at /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:43:4)] Ret init(Func &&f) { return {std::forward(f)}; } ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/externals/pybind11/include/pybind11/pybind11.h:1650:68: note: candidate function template not viable: requires 0 arguments, but 1 was provided template detail::initimpl::constructor init() { return {}; } ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/externals/pybind11/include/pybind11/pybind11.h:1662:5: note: candidate function template not viable: requires 2 arguments, but 1 was provided Ret init(CFunc &&c, AFunc &&a) { ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:82:12: error: use of undeclared identifier 'UnionFindFromParity' return UnionFindFromParity(static_cast(num_parities), ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:62:8: error: no matching function for call to 'init' .def(py::init( ^~~~~~~~ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/externals/pybind11/include/pybind11/pybind11.h:1657:5: note: candidate template ignored: substitution failure [with Func = (lambda at /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:63:4)] Ret init(Func &&f) { return {std::forward(f)}; } ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/externals/pybind11/include/pybind11/pybind11.h:1650:68: note: candidate function template not viable: requires 0 arguments, but 1 was provided template detail::initimpl::constructor init() { return {}; } ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/externals/pybind11/include/pybind11/pybind11.h:1662:5: note: candidate function template not viable: requires 2 arguments, but 1 was provided Ret init(CFunc &&c, AFunc &&a) { ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:88:18: error: use of undeclared identifier 'UnionFindFromParity' .def("clear", &UnionFindFromParity::clear, "Clear decoder's internal data") ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:89:40: error: use of undeclared identifier 'UnionFindFromParity' .def_property_readonly("num_edges", &UnionFindFromParity::num_edges, ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:92:21: error: use of undeclared identifier 'UnionFindFromParity' "num_vertices", &UnionFindFromParity::num_vertices, ^ /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:96:7: error: unknown type name 'UnionFindFromParity' [](UnionFindFromParity& decoder, ^ 19 errors generated. ninja: build stopped: subcommand failed. Traceback (most recent call last): File "/Users/honamnguyen/miniconda3/UnionFind/setup.py", line 130, in setup(classifiers=classifiers, **(info)) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/__init__.py", line 153, in setup return distutils.core.setup(**attrs) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/core.py", line 148, in setup dist.run_commands() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/command/install.py", line 67, in run self.do_egg_install() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/command/install.py", line 109, in do_egg_install self.run_command('bdist_egg') File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/command/bdist_egg.py", line 164, in run cmd = self.call_command('install_lib', warn_dir=0) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/command/bdist_egg.py", line 150, in call_command self.run_command(cmdname) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/command/install_lib.py", line 11, in run self.build() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/command/install_lib.py", line 107, in build self.run_command('build_ext') File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/command/build_ext.py", line 79, in run _build_ext.run(self) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/command/build_ext.py", line 340, in run self.build_extensions() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/command/build_ext.py", line 449, in build_extensions self._build_extensions_serial() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/command/build_ext.py", line 474, in _build_extensions_serial self.build_extension(ext) File "/Users/honamnguyen/miniconda3/UnionFind/setup.py", line 78, in build_extension subprocess.check_call( File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/subprocess.py", line 373, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['cmake', '--build', '.']' returned non-zero exit status 1. ```
chaeyeunpark commented 2 years ago

Hi @honamnguyen, thank you for the interest! Unfortunately, as I don't have a mac machine, I don't think I can fix this issue at the moment. Instead, I would like to suggest you use clang++ instead of AppleClang++. You can install it using homebrew (see e.g. this). Then 

$ CXX=clang++ python setup.py install

will work.

honamnguyen commented 2 years ago

Hi Chae-Yeun, thank you for the quick reply! After figuring out the right clang++ version, the build seemed to be completed but when I imported UnionFindPy, the file _union_find_py.py is missing. Maybe something went wrong during the build?

(base) honamnguyen@Nams-MacBook-Air UnionFind % python
Python 3.8.11 (default, Jul 29 2021, 14:57:32) 
[Clang 12.0.0 ] :: Anaconda, Inc. on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import UnionFind
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ModuleNotFoundError: No module named 'UnionFind'
>>> import UnionFindPy
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/__init__.py", line 2, in <module>
    from .decoder import Decoder
  File "/Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/decoder.py", line 1, in <module>
    from ._union_find_py import DecoderFromParity
ModuleNotFoundError: No module named 'UnionFindPy._union_find_py'

I also tried different combinations of C compiler and C++ compiler between clang and AppleClang and found that only the CC=AppleClang + CXX=clang++ combination finished the build. Here are some of the outputs.

Output for `CXX=clang++` (successful build) ``` (base) honamnguyen@Nams-MacBook-Air UnionFind % CXX=clang++ python3 setup.py install running install running bdist_egg running egg_info writing UnionFindPy.egg-info/PKG-INFO writing dependency_links to UnionFindPy.egg-info/dependency_links.txt writing requirements to UnionFindPy.egg-info/requires.txt writing top-level names to UnionFindPy.egg-info/top_level.txt reading manifest file 'UnionFindPy.egg-info/SOURCES.txt' writing manifest file 'UnionFindPy.egg-info/SOURCES.txt' installing library code to build/bdist.macosx-11.1-arm64/egg running install_lib running build_py running build_ext -- The C compiler identification is AppleClang 13.0.0.13000029 -- The CXX compiler identification is Clang 13.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /opt/homebrew/opt/llvm/bin/clang++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- union_find version -- pybind11 v2.8.1 -- Found PythonInterp: /Users/honamnguyen/miniconda3/bin/python3 (found version "3.8.11") -- Found PythonLibs: /Users/honamnguyen/miniconda3/lib/libpython3.8.dylib -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Performing Test HAS_FLTO_THIN -- Performing Test HAS_FLTO_THIN - Success -- Configuring done -- Generating done -- Build files have been written to: /Users/honamnguyen/miniconda3/UnionFind/build/temp.macosx-11.1-arm64-3.8 [2/3] Building CXX object UnionFindPy/cpp/CMa.../_union_find_py.dir/binding/UnionFindPy.cpp. /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:114:34: warning: braces around scalar initializer [-Wbraced-scalar-init] return py::array_t({(int64_t)decoder.num_edges()}, corrections, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [3/3] Linking CXX shared module ../lib.macosx...ionFindPy/_union_find_py.cpython-38-darwin.s creating build/bdist.macosx-11.1-arm64 creating build/bdist.macosx-11.1-arm64/egg creating build/bdist.macosx-11.1-arm64/egg/UnionFindPy copying build/lib.macosx-11.1-arm64-3.8/UnionFindPy/decoder.py -> build/bdist.macosx-11.1-arm64/egg/UnionFindPy copying build/lib.macosx-11.1-arm64-3.8/UnionFindPy/_version.py -> build/bdist.macosx-11.1-arm64/egg/UnionFindPy copying build/lib.macosx-11.1-arm64-3.8/UnionFindPy/__init__.py -> build/bdist.macosx-11.1-arm64/egg/UnionFindPy creating build/bdist.macosx-11.1-arm64/egg/UnionFindPy/cpp copying build/lib.macosx-11.1-arm64-3.8/UnionFindPy/cpp/CMakeLists.txt -> build/bdist.macosx-11.1-arm64/egg/UnionFindPy/cpp copying build/lib.macosx-11.1-arm64-3.8/UnionFindPy/cpp/Makefile -> build/bdist.macosx-11.1-arm64/egg/UnionFindPy/cpp copying build/lib.macosx-11.1-arm64-3.8/UnionFindPy/_union_find_py.cpython-38-darwin.so -> build/bdist.macosx-11.1-arm64/egg/UnionFindPy byte-compiling build/bdist.macosx-11.1-arm64/egg/UnionFindPy/decoder.py to decoder.cpython-38.pyc byte-compiling build/bdist.macosx-11.1-arm64/egg/UnionFindPy/_version.py to _version.cpython-38.pyc byte-compiling build/bdist.macosx-11.1-arm64/egg/UnionFindPy/__init__.py to __init__.cpython-38.pyc creating stub loader for UnionFindPy/_union_find_py.cpython-38-darwin.so byte-compiling build/bdist.macosx-11.1-arm64/egg/UnionFindPy/_union_find_py.py to _union_find_py.cpython-38.pyc creating build/bdist.macosx-11.1-arm64/egg/EGG-INFO copying UnionFindPy.egg-info/PKG-INFO -> build/bdist.macosx-11.1-arm64/egg/EGG-INFO copying UnionFindPy.egg-info/SOURCES.txt -> build/bdist.macosx-11.1-arm64/egg/EGG-INFO copying UnionFindPy.egg-info/dependency_links.txt -> build/bdist.macosx-11.1-arm64/egg/EGG-INFO copying UnionFindPy.egg-info/requires.txt -> build/bdist.macosx-11.1-arm64/egg/EGG-INFO copying UnionFindPy.egg-info/top_level.txt -> build/bdist.macosx-11.1-arm64/egg/EGG-INFO writing build/bdist.macosx-11.1-arm64/egg/EGG-INFO/native_libs.txt zip_safe flag not set; analyzing archive contents... UnionFindPy.__pycache__._union_find_py.cpython-38: module references __file__ creating 'dist/UnionFindPy-0.2.0-py3.8-macosx-11.1-arm64.egg' and adding 'build/bdist.macosx-11.1-arm64/egg' to it removing 'build/bdist.macosx-11.1-arm64/egg' (and everything under it) Processing UnionFindPy-0.2.0-py3.8-macosx-11.1-arm64.egg creating /Users/honamnguyen/miniconda3/lib/python3.8/site-packages/UnionFindPy-0.2.0-py3.8-macosx-11.1-arm64.egg Extracting UnionFindPy-0.2.0-py3.8-macosx-11.1-arm64.egg to /Users/honamnguyen/miniconda3/lib/python3.8/site-packages Adding UnionFindPy 0.2.0 to easy-install.pth file Installed /Users/honamnguyen/miniconda3/lib/python3.8/site-packages/UnionFindPy-0.2.0-py3.8-macosx-11.1-arm64.egg Processing dependencies for UnionFindPy==0.2.0 Searching for ninja==1.10.2.3 Best match: ninja 1.10.2.3 Adding ninja 1.10.2.3 to easy-install.pth file Installing ninja script to /Users/honamnguyen/miniconda3/bin Using /Users/honamnguyen/miniconda3/lib/python3.8/site-packages Finished processing dependencies for UnionFindPy==0.2.0 ```
Output for `CC=clang CXX=clang++` (unsuccessful build) (qcircuit64) honamnguyen@Nams-MacBook-Air UnionFind % CC=clang CXX=clang++ python setup.py install running install running bdist_egg running egg_info writing UnionFindPy.egg-info/PKG-INFO writing dependency_links to UnionFindPy.egg-info/dependency_links.txt writing requirements to UnionFindPy.egg-info/requires.txt writing top-level names to UnionFindPy.egg-info/top_level.txt reading manifest file 'UnionFindPy.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'UnionFindPy.egg-info/SOURCES.txt' installing library code to build/bdist.macosx-10.9-x86_64/egg running install_lib running build_py running build_ext -- The C compiler identification is Clang 13.0.1 -- The CXX compiler identification is Clang 13.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/opt/llvm/bin/clang - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/opt/llvm/bin/clang++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- union_find version -- pybind11 v2.8.1 -- Found PythonInterp: /Users/honamnguyen/miniconda3/envs/qcircuit64/bin/python (found version "3.9.7") -- Found PythonLibs: /Users/honamnguyen/miniconda3/envs/qcircuit64/lib/libpython3.9.dylib -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Performing Test HAS_FLTO_THIN -- Performing Test HAS_FLTO_THIN - Success -- Configuring done -- Generating done -- Build files have been written to: /Users/honamnguyen/miniconda3/UnionFind/build/temp.macosx-10.9-x86_64-3.9 [2/3] Building CXX object UnionFindPy/cpp/CMakeFiles/_union_find_py.dir/binding/UnionFindPy.cpp.o /Users/honamnguyen/miniconda3/UnionFind/UnionFindPy/cpp/binding/UnionFindPy.cpp:114:34: warning: braces around scalar initializer [-Wbraced-scalar-init] return py::array_t({(int64_t)decoder.num_edges()}, corrections, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. [3/3] Linking CXX shared module ../lib.macosx-10.9-x86_64-3.9/UnionFindPy/_union_find_py.cpython-39-darwin.so FAILED: ../lib.macosx-10.9-x86_64-3.9/UnionFindPy/_union_find_py.cpython-39-darwin.so : && /usr/local/opt/llvm/bin/clang++ -O3 -DNDEBUG -arch x86_64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.1.sdk -bundle -Wl,-headerpad_max_install_names -L/usr/local/opt/llvm/lib -Xlinker -undefined -Xlinker dynamic_lookup -flto -o ../lib.macosx-10.9-x86_64-3.9/UnionFindPy/_union_find_py.cpython-39-darwin.so UnionFindPy/cpp/CMakeFiles/_union_find_py.dir/binding/UnionFindPy.cpp.o UnionFindPy/cpp/CMakeFiles/_union_find_py.dir/src/utility.cpp.o && cd /Users/honamnguyen/miniconda3/UnionFind/build/temp.macosx-10.9-x86_64-3.9/UnionFindPy/cpp && /usr/local/opt/llvm/bin/llvm-strip -x /Users/honamnguyen/miniconda3/UnionFind/build/lib.macosx-10.9-x86_64-3.9/UnionFindPy/_union_find_py.cpython-39-darwin.so /usr/local/opt/llvm/bin/llvm-strip: error: unsupported load command (cmd=0x80000034) ninja: build stopped: subcommand failed. Traceback (most recent call last): File "/Users/honamnguyen/miniconda3/UnionFind/setup.py", line 130, in setup(classifiers=classifiers, **(info)) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/__init__.py", line 153, in setup return distutils.core.setup(**attrs) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/core.py", line 148, in setup dist.run_commands() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/command/install.py", line 67, in run self.do_egg_install() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/command/install.py", line 109, in do_egg_install self.run_command('bdist_egg') File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/command/bdist_egg.py", line 164, in run cmd = self.call_command('install_lib', warn_dir=0) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/command/bdist_egg.py", line 150, in call_command self.run_command(cmdname) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/command/install_lib.py", line 11, in run self.build() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/command/install_lib.py", line 107, in build self.run_command('build_ext') File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/site-packages/setuptools/command/build_ext.py", line 79, in run _build_ext.run(self) File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/command/build_ext.py", line 340, in run self.build_extensions() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/command/build_ext.py", line 449, in build_extensions self._build_extensions_serial() File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/distutils/command/build_ext.py", line 474, in _build_extensions_serial self.build_extension(ext) File "/Users/honamnguyen/miniconda3/UnionFind/setup.py", line 78, in build_extension subprocess.check_call( File "/Users/honamnguyen/miniconda3/envs/qcircuit64/lib/python3.9/subprocess.py", line 373, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['cmake', '--build', '.']' returned non-zero exit status 1.
chaeyeunpark commented 2 years ago

Thanks for the details! I tried to make a wheel for Mac M1 (you may see artifacts here). Could you install this directly (with e.g. https://stackoverflow.com/a/64450982/2470172)? Ideally, I think it is time to upload wheels to PyPI (for pip).

honamnguyen commented 2 years ago

So I copied the file to the UnionFind folder and tried pip install and wheel unpack with both extensions .yml and .whl but it didn't work, saying that the file name was invalid. I also tried to rename it to UnionFindPy-0.2.0-cp37-osx_arm64.whl but no luck. I don't think that I am installing from a wheel correctly...

Having this on pip would be great! If it's not too bad, can you have a wheel for the 86_64x architecture on macOS as well?

Thank you for spending the time on this!

chaeyeunpark commented 2 years ago

Hi, I uploaded wheels to PyPI (currently only for Mac and Windows). You can now just install it with pip. See https://pypi.org/project/UnionFindPy/.