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chaitjo / geometric-rna-design

gRNAde: Geometric Deep Learning for 3D RNA inverse design

https://arxiv.org/abs/2305.14749

MIT License

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Ask for checkpoints #2

Closed GRAPH-0 closed 9 months ago

GRAPH-0 commented 1 year ago

Hi @chaitjo,

Thanks for your great work first! Could you provide a pretrained checkpoint to run inference directly?

Best regards, Han

chaitjo commented 1 year ago

Hello Han,

Thank you for your interest and sorry for my late response! The code + paper is still under active development so we haven't released a pretrained checkpoint yet. I expect that the model classes may change further as we improve things about the work and do more experiments.

We definitely plan to release pre-trained checkpoints and a nice notebook showcasing usage in the coming months once I am back from internship.

Best, Chaitanya

GRAPH-0 commented 1 year ago

Thanks for your reply and look forward to your subsequent releases!

chaitjo commented 9 months ago

Hi @GRAPH-0, I release that this is much delayed, but do have a look at the latest release of the codebase. You will find:

A detailed tutorial on how to use gRNAde: https://github.com/chaitjo/geometric-rna-design/blob/main/tutorial/tutorial.ipynb
gRNAde models accessable via command line: https://github.com/chaitjo/geometric-rna-design/blob/main/gRNAde.py
Checkpoints: https://github.com/chaitjo/geometric-rna-design/tree/main/checkpoints

Let me know if you have any questions!