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chaitjo / geometric-rna-design

gRNAde: Geometric Deep Learning for 3D RNA inverse design
https://arxiv.org/abs/2305.14749
MIT License
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Add utilities for perplexity computation #7

Closed chaitjo closed 7 months ago

chaitjo commented 7 months ago

This PR implements functions in the gRNAde module for computing the perplexity of a sequence conditioned on one or more backbone structures, i.e. the model's guess of the likelihood that the sequence folds into the backbone.