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chaitjo / geometric-rna-design

gRNAde: Geometric Deep Learning for 3D RNA inverse design
https://arxiv.org/abs/2305.14749
MIT License
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Splits for benchmark #9

Closed ParthBibekar closed 6 months ago

ParthBibekar commented 6 months ago

Hi,

Congrats on the great work. As I understand data/seqid_split.pt data/das_split.pt and data/structsim_split.pt contains the train, test, validation idx for different splits. And the corresponding pdbid_<chain> for those can be extracted from processed_df.csv. Can you provide this preprocessed processed_df.csv file or directly the PDB ids for easier access?

Thanks!

chaitjo commented 6 months ago

Hi @ParthBibekar, thanks for your interest! You can download exactly that via the links in the README: https://github.com/chaitjo/geometric-rna-design?tab=readme-ov-file#downloading-data

ParthBibekar commented 6 months ago

Thanks @chaitjo exactly what I needed!

chaitjo commented 6 months ago

Let me know if you need any other help setting this up :)