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channotation / chap

CHAP is a tool for the functional annotation of ion channel structures:
http://www.channotation.org
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Issue using the simg file #48

Open vinnu0143 opened 1 year ago

vinnu0143 commented 1 year ago

Hi, I am trying to use CHAP with singularity image. But it give the following error. I am using singularity image with Mac, uisng SingularityCE vagrant box with ubuntu 18.04, singularity version 3.8.1.

singularity shell --nv chap_singularity_version2.simg INFO: Could not find any nv files on this host! WARNING: Could not find any nv libraries on this host! WARNING: You may need to manually edit /usr/local/etc/singularity/nvliblist.conf FATAL: could not open image /home/vagrant/chap_singularity_version2.simg: image format not recognized

batuujin commented 9 months ago

Have you found a solution to this problem? I am also facing the same issue with singularity-ce version 4.0.2-jammy on ubuntu 22.04

~/apps/CHAP$ singularity shell --nv chap_singularity_version2.simg

FATAL: While checking image: could not open image /home/bburendei/apps/CHAP/chap_singularity_version2.simg: image format not recognized

vinnu0143 commented 9 months ago

No, i haven't found any solution for this.

DSeiferth commented 7 months ago

I am aware that there is also an issue with singularity-ce version 3.11.3-jammy.

I am using singularity-ce version 3.10.4 on Ubuntu (and this works).

aspitaleri commented 3 months ago

It works perfect using singularity-3.8.1 but using https://github.com/channotation/chap/blob/singularity_branch/singularity_images/chap_sing.sif. Do not use wget but clone it.