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channotation / chap

CHAP is a tool for the functional annotation of ion channel structures:
http://www.channotation.org
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Regarding protein pore visualization #51

Closed aashuph16221 closed 6 months ago

aashuph16221 commented 6 months ago

Hello,

I am Aashish, and I am calculating channel pore profiles using Chap. I have installed Chap using Anaconda.

I have successfully generated the pore output files, but when I visualize the pore in VMD using both the tcl script "visualise_pathway.tcl" and "wobj.tcl", the protein pore profile is always in white color, whereas the pore residue is orange and yellow.

Do I miss something?

I am using the following command:

chap -f protein.xtc -s protein.pdb --sel-pathway 1

Regards,

Aashish

aashuph16221 commented 6 months ago

Hello,

Sorry for the previous message. I have sorted out the issue.

Thank you.