Closed hongsilv closed 2 years ago
Hi @hongsilv,
Sorry for the inconvenience As you can see in the demo, the edges of cells are colored by on-off information, and the faces of cells are colored by additional data - usually, cell types. The error occurred because the code was assuming that the data for coloring the face was stored in the column named "phenoid"
in the *.metadatacol.tsv
file. Now that I have corrected the bug, users can choose the column they want to use for coloring the faces of cells or even choose not to color them. However, as the code changed a lot in this release, it might be not straightforward to use the new codes with the format of data you have obtained previously.
In your current situation, you can try the following workaround. If your *.metadatacol.tsv
contains a column you want to use for coloring the faces of cells, a simple solution is to replace "phenoid"
with the name of the column by modifying the code manually. (based on the error message, the path of the file is /home/data/MarcoPolo/MarcoPolo_install/MarcoPolo/MarcoPolo/report.py
). If you don't have a column to do so, please just add "phenoid"
column filled with ones to the *.metadatacol.tsv
file.
Thank you so much for using our software. Please feel free to reach out if you have any other questions.
Best, Chanwoo
Thank you for your kind response. As you told me, I changed the one of column name into 'phenoid' , UMAP_1 to TSNE_1, UMAP_2 to TSNE_2 and all errors were resolved! Thank you very much.
Best regards, SungEun
Hi, I greatly thank you for the wonderful software.
I was trying MarcoPolo with my scRNA-seq data, I found that save_QQscore, save_MarcoPolo function works well, but "generate_report" function keeps giving me this error
when I look at the outputs, "files index.html", "voting.html" and directory "assets" seems to be properly generated, but directory "plot_image" is empty. Can you help me resolve this error?
Thank you,