chanzuckerberg / cellxgene-census

CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
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[builder] wrong UBERON version #1017

Closed bkmartinjr closed 8 months ago

bkmartinjr commented 8 months ago

The schema 4.0.0 update did not bump the UBERON version used by the tissue mapper. Per the 4.0 schema, it should be v2023-09-05, but is currently using the schema 3 UBERON (v2023-06-28).

The pinned URL should be: https://github.com/obophenotype/uberon/releases/download/v2023-09-05/uberon.owl

CC: @brianraymor @pablo-gar

bkmartinjr commented 8 months ago

In addition, there appear to have been two changes to the TissueMapper (code copied into Builder from WMG, as we don't have a DRY package containing this).

In the WMG version, the HIGH_LEVEL_TISSUES list:

Should we make the same change in Census builder, alongside the above version change?

pablo-gar commented 8 months ago

yes please!