codecov[bot]
commented
5 months ago Codecov Report
Attention: Patch coverage is 33.33333% with 2 lines in your changes are missing coverage. Please review.
Project coverage is 81.35%. Comparing base (
a5dbdef) to head (d1dde47).
| Files | Patch % | Lines |
|---|---|---|
| ...llxgene_census_builder/build_soma/validate_soma.py | 0.00% | 2 Missing :warning: |
Additional details and impacted files
```diff @@ Coverage Diff @@ ## main #1064 +/- ## ========================================== + Coverage 81.33% 81.35% +0.01% ========================================== Files 73 73 Lines 5566 5566 ========================================== + Hits 4527 4528 +1 + Misses 1039 1038 -1 ``` | [Flag](https://app.codecov.io/gh/chanzuckerberg/cellxgene-census/pull/1064/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=chanzuckerberg) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/chanzuckerberg/cellxgene-census/pull/1064/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=chanzuckerberg) | `81.35% <33.33%> (+0.01%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=chanzuckerberg#carryforward-flags-in-the-pull-request-comment) to find out more.:umbrella: View full report in Codecov by Sentry.
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This PR enables the use of Arrow dictionary (aka TileDB enum, Pandas Categorical, ...) in building the Census. Affects various string columns in the
obsdataframe which contain repetitive labels, such ascell_type. Primary impact is more efficient memory use for end-user (reader) of Census obs dataframe.Fixes #604
Other changes: