[python] Improve the embedding API for the non get_anndata path

chanzuckerberg / cellxgene-census

CZ CELLxGENE Discover Census

https://chanzuckerberg.github.io/cellxgene-census/

MIT License

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[python] Improve the embedding API for the non get_anndata path #1074

Open ebezzi opened 4 months ago

ebezzi commented 4 months ago

The ExperimentAxisQuery path for getting an embedding is still not straightforward even with the new API, and it requires you to still specify the embedding URI, join via the soma_joinids, etc. A few small improvement could make these read paths much easier. See the notebooks for details.