chanzuckerberg / cellxgene-census

CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
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Make prototype of Census builder with support of Spatial data #1127

Open pablo-gar opened 2 months ago

pablo-gar commented 2 months ago

Scope

The prototype builder should be able to:

  1. Take the input example data (see below)
  2. Wrangle each component into the correct objects and structure according to the draft Census schema.
  3. Output a test spatial Census build.

Relevant information

Input example data

The h5ads described in this document.

Census Visium spatial test datasets

@prathapsridharan familiarity with the CELLxGENE Dataset schema 5.1.0 is necessary.

Census spatial schema

Please top-comment in this ticket for the schema text. See last comment for an schematic of the latest iteration of the schema.

TileDB-SOMA implementation

Please become familiar with the Spatial proposal: Proposed SOMA Spatial Support

To implement the Census schema in the builder please use the branch spatial from somacore.