chanzuckerberg / cellxgene-census

CZ CELLxGENE Discover Census
https://chanzuckerberg.github.io/cellxgene-census/
MIT License
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[python] Update docs for `get_obs`, `get_var` #1170

Closed ivirshup closed 21 hours ago

ivirshup commented 1 month ago

So many notebooks....

Closes https://github.com/chanzuckerberg/cellxgene-census/issues/1037

This PR is a follow up to #1151. Here, I go around replacing instances of census[experiment].obs.read().concat().to_pandas() with cellxgene_census.get_obs(census, experiment).

It's a draft since I haven't gotten to them all yet.

codecov[bot] commented 1 month ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 91.25%. Comparing base (f775282) to head (803cb90). Report is 1 commits behind head on main.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #1170 +/- ## ========================================== + Coverage 91.19% 91.25% +0.06% ========================================== Files 77 79 +2 Lines 5971 6141 +170 ========================================== + Hits 5445 5604 +159 - Misses 526 537 +11 ``` | [Flag](https://app.codecov.io/gh/chanzuckerberg/cellxgene-census/pull/1170/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=chanzuckerberg) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/chanzuckerberg/cellxgene-census/pull/1170/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=chanzuckerberg) | `91.25% <ø> (+0.06%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=chanzuckerberg#carryforward-flags-in-the-pull-request-comment) to find out more.

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